PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn242211
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 183aa    MW: 20458.2 Da    PI: 6.7792
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn242211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.1e-094272347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt++++k++w++ 
       Achn242211  4 RWSLIAGRLP-GRTDNEIKNYWNTT 27
                     4*********.************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.954132IPR017930Myb domain
SuperFamilySSF466892.69E-7333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-12328IPR009057Homeodomain-like
CDDcd001671.57E-6428No hitNo description
PfamPF002491.7E-6427IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLSRWSLIAG RLPGRTDNEI KNYWNTTLGK KIRPQTSRES SKNNLTRKSK GKQPVIPPPP  60
SAIRTKAVRC AKLLAPAKSP PTLGPLFLNQ PVEKSFAVLE ENQSQISKNP LLCVENSHGT  120
EPLEFSFHDQ FHHNNGLCLE GLDDHDMVFK DWTASHEFLE VEGNCTLDLE SLASLLDCEE  180
WP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-15MYB family protein